Source code for submodlib.functions.facilityLocationMutualInformation
# facilityLocationMutualInformation.py
# Author: Vishal Kaushal <vishal.kaushal@gmail.com>
import numpy as np
import scipy
from .setFunction import SetFunction
import submodlib_cpp as subcp
from submodlib_cpp import FacilityLocationMutualInformation
#from submodlib.helper import create_kernel
[docs]class FacilityLocationMutualInformationFunction(SetFunction):
"""Implementation of the Facility Location Mutual Information (FLMI or FL1MI) function.
Given a :ref:`functions.submodular-mutual-information` function, Facility Location Mutual Information function is its instantiation using a :class:`~submodlib.functions.facilityLocation.FacilityLocationFunction`. Mathematically, it takes the following form:
.. math::
I_f(A; Q) = \sum\limits_{i \in V}\min(\max\limits_{j \in A}s_{ij}, \eta \max\limits_{j \in Q}s_{ij})
.. note::
FL1MI tends to get *saturated*. That is, once the query is satisfied, it doesn't see any gain in picking another query-relevant data point. Also, while GCMI lies at one end of the spectrum favoring query-relevance, FLMI lies at the other end favoring diversity and query coverage over query-relevance.
Parameters
----------
n : int
Number of elements in the ground set. Must be > 0.
num_queries : int
Number of query points in the target.
data_sijs : numpy.ndarray, optional
Similarity kernel between the elements of the ground set. Shape: n X n. When not provided, it is computed using data.
query_sijs : numpy.ndarray, optional
Similarity kernel between the ground set and the queries. Shape: n X num_queries. When not provided, it is computed using data, queryData and metric.
data : numpy.ndarray, optional
Matrix of shape n X num_features containing the ground set data elements. data[i] should contain the num-features dimensional features of element i. Mandatory, if either if data_sijs or private_sijs is not provided. Ignored if both data_sijs and private_sijs are provided.
queryData : numpy.ndarray, optional
Matrix of shape num_queries X num_features containing the query elements. queryData[i] should contain the num-features dimensional features of query i. It is optional (and is ignored if provided) if query_sijs has been provided.
metric : str, optional
Similarity metric to be used for computing the similarity kernels. Can be "cosine" for cosine similarity or "euclidean" for similarity based on euclidean distance. Default is "cosine".
magnificationEta : float, optional
The value of the query-relevance vs diversity trade-off. Increasing :math:`\eta` tends to increase query-relevance while reducing query-coverage and diversity. Default is 1.
"""
def __init__(self, n, num_queries, data_sijs=None, query_sijs=None, data=None, queryData=None, metric="cosine", magnificationEta=1):
self.n = n
self.num_queries = num_queries
self.metric = metric
self.data_sijs = data_sijs
self.query_sijs = query_sijs
self.data = data
self.queryData = queryData
self.magnificationEta=magnificationEta
self.cpp_obj = None
self.cpp_data_sijs = None
self.cpp_query_sijs = None
self.cpp_content = None
self.effective_ground = None
if self.n <= 0:
raise Exception("ERROR: Number of elements in ground set must be positive")
if self.num_queries < 0:
raise Exception("ERROR: Number of queries must be >= 0")
# if self.metric not in ['euclidean', 'cosine']:
# raise Exception("ERROR: Unsupported metric. Must be 'euclidean' or 'cosine'")
if (type(self.data_sijs) != type(None)) and (type(self.query_sijs) != type(None)): # User has provided both kernels
if type(self.data_sijs) != np.ndarray:
raise Exception("Invalid data kernel type provided, must be ndarray")
if type(self.query_sijs) != np.ndarray:
raise Exception("Invalid query kernel type provided, must be ndarray")
if np.shape(self.data_sijs)[0]!=self.n or np.shape(self.data_sijs)[1]!=self.n:
raise Exception("ERROR: data kernel should be n X n")
if np.shape(self.query_sijs)[0]!=self.n or np.shape(self.query_sijs)[1]!=self.num_queries:
raise Exception("ERROR: Query Kernel should be n X num_queries")
if (type(self.data) != type(None)) or (type(self.queryData) != type(None)):
print("WARNING: similarity kernels found. Provided data and query matrices will be ignored.")
else: #similarity kernels have not been provided
if (type(self.data) == type(None)) or (type(self.queryData) == type(None)):
raise Exception("Since kernels are not provided, data matrices are a must")
if np.shape(self.data)[0]!=self.n:
raise Exception("ERROR: Inconsistentcy between n and no of examples in the given data matrix")
if np.shape(self.queryData)[0]!=self.num_queries:
raise Exception("ERROR: Inconsistentcy between num_queries and no of examples in the given query data matrix")
#construct imageKernel
self.num_neighbors = self.n #Using all data as num_neighbors in case of dense mode
self.cpp_content = np.array(subcp.create_kernel(self.data.tolist(), self.metric, self.num_neighbors))
val = self.cpp_content[0]
row = list(self.cpp_content[1].astype(int))
col = list(self.cpp_content[2].astype(int))
self.data_sijs = np.zeros((self.n,self.n))
self.data_sijs[row,col] = val
#construct queryKernel
self.query_sijs = np.array(subcp.create_kernel_NS(self.queryData.tolist(),self.data.tolist(), self.metric))
#Breaking similarity matrix to simpler native data structures for implicit pybind11 binding
self.cpp_data_sijs = self.data_sijs.tolist() #break numpy ndarray to native list of list datastructure
if type(self.cpp_data_sijs[0])==int or type(self.cpp_data_sijs[0])==float: #Its critical that we pass a list of list to pybind11
#This condition ensures the same in case of a 1D numpy array (for 1x1 sim matrix)
l=[]
l.append(self.cpp_data_sijs)
self.cpp_data_sijs=l
self.cpp_query_sijs = self.query_sijs.tolist() #break numpy ndarray to native list of list datastructure
if type(self.cpp_query_sijs[0])==int or type(self.cpp_query_sijs[0])==float: #Its critical that we pass a list of list to pybind11
#This condition ensures the same in case of a 1D numpy array (for 1x1 sim matrix)
l=[]
l.append(self.cpp_query_sijs)
self.cpp_query_sijs=l
self.cpp_obj = FacilityLocationMutualInformation(self.n, self.num_queries, self.cpp_data_sijs, self.cpp_query_sijs, self.magnificationEta)
self.effective_ground = set(range(n))